PTM Viewer PTM Viewer

AT1G14830.1

Arabidopsis thaliana [ath]

DYNAMIN-like 1C

6 PTM sites : 5 PTM types

PLAZA: AT1G14830
Gene Family: HOM05D000331
Other Names: ADL1CADL5,ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5,DRP1C,DYNAMIN RELATED PROTEIN 1C; DL1C

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
nt A 2 ATMKSLIGLIN99
ATMKSLIGLI5
nta A 2 ATMKSLIGLINKIQR80
167a
ATMKSLIGLIN99
ATMKSLIGLI5
sno C 223 GTDCLDVLEGR169
ac K 385 HLSTKNVQK101
ub K 440 KSISETEELKR168
ac K 449 KSISETEELKR101
SISETEELKR101

Sequence

Length: 614

MATMKSLIGLINKIQRACTVLGDHGGEGMSLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTGERTFGVATKLDIMDKGTDCLDVLEGRSYRLQHPWVGIVNRSQADINKRVDMIAARRKEQEYFETSPEYGHLASRMGSEYLAKLLSQHLETVIRQKIPSIVALINKSIDEINAELDRIGRPIAVDSGAQLYTILELCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSTKNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEATVDAVHFVLKELVRKSISETEELKRFPTLASDIAAAANEALERFRDESRKTVLRLVDMESSYLTVEFFRKLHLEPEKEKPNPRNAPAPNADPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAWK

ID PTM Type Color
nt N-terminus Proteolysis X
nta N-terminal Acetylation X
sno S-nitrosylation X
ac Acetylation X
ub Ubiquitination X
Multiple types X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR000375 222 489
IPR001401 4 301
IPR003130 518 611
IPR020850 523 614
IPR030381 32 301
Sites
Show Type Position
Active Site 45
Active Site 213
Active Site 243

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here